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Searls, D. B. (2002) The language of genes. Nature, 420:211--217.

References (may not be complete)  [Original format]  [Sort by year]  [Sort by author]  [Sort by citations]

1976 -The Selfish Gene - Dawkins :: 43
1957 -Syntactic Structures - Chomsky :: 36
2002 -Computational and evolutionary aspects of language - Nowak,Komarova,Niyogi :: 31
1949 -Human Behavior and the Principle of Least Effort - Zipf :: 11
1871 -The Descent of Man - Darwin :: 5
1997 -Mathematical approaches to comparative linguistics - Warnow :: 4
1999 -Tower of Babel: The Evidence against the New Creationism - Pennock :: 3
1985 -Evidence against the context-freeness of natural language - Shieber :: 3
1983 -The Fractal Geometry of Nature - Mandelbrot :: 3
1998 -The phylogeny of the Canterbury Tales - Barbrook,Howe,Blake,Robinson :: 2
2001 -The Power of Babel: A Natural History of Language - McWhorter :: 2
1977 -Cladistic methods in textual, linguistic, and phylogenetic analysis - Platnick,Cameron :: 2
1995 -String Variable Grammar: a logic grammar formalism for DNA sequences - Searls :: 1
1999 -Tree-adjoining grammars for RNA structure prediction - Uemura,Hasegawa,Kobayashi,Yokomori :: 1
1997 -Linguistic approaches to biological sequences - Searls :: 1
2001 -Whole-genome expression analysis: challenges beyond clustering - Altman,Raychaudhuri :: 1
2001 -Birth of scale-free molecular networks and the number of distinct DNA and protein domains per genome - Rzhetsky,Gomez :: 1
1994 -Linguistic features of noncoding DNA sequences - Mantegna :: 1
1995 -Hypertextual representation of literary working papers - Ferrer :: 1
1996 -Linguistic complexity of protein sequences as compared to texts of human languages - Popov,Segal,Trifonov :: 1
1993 -A quality control algorithm for DNA sequencing projects - White :: 1
1993 -Retrieving collocations from text: XTRACT - Smadja :: 1
1994 -Stochastic context-free grammars for tRNA modeling - Sakakibara :: 1
1994 -Gene structure prediction by linguistic methods - Dong,Searls :: 1
1997 -Predicting protein secondary structure using stochastic tree grammars - Abe,Mamitsuka :: 1
2000 -The COG database: a tool for genome-scale analysis of protein functions and evolution - Tatusov,Galperin,Natale,Koonin :: 1
2001 -Bioinformatics: The Machine Learning Approach - Baldi,Brunak :: 1
2002 -Pairwise RNA structure comparison with stochastic context-free grammars - Holmes,Rubin :: 1
2000 -Whole-genome trees based on the occurrence of folds and orthologs: implications for comparing genomes on different levels - Lin,Gerstein :: 1
2002 -Genomics and natural language processing - Yandell,Majoros :: 1
1952 -Lexicostatistical dating of prehistoric ethnic contacts: with special reference to North American Indians and Eskimos - Swadesh :: 1
2001 -Basic Gene Grammars and DNA-ChartParser for language processing of Escherichia coli promoter DNA sequences - Leung,Mellish,Robertson :: 1
1989 -A transformational-grammar approach to the study of the regulation of gene expression - Collado-Vides :: 1
2002 -Text categorization with support vector machines - Leopold,Kindermann :: 1
1999 -The minimal genome concept - Mushegian :: 1
1996 -Syntactic recognition of regulatory regions in Escherichia coli - Rosenblueth :: 1
1999 -The genomic tree as revealed from whole proteome comparisons - Tekaia,Lazcano,Dujon :: 1
2002 -Studying genomes through the aeons: protein families, pseudogenes and proteome evolution - Harrison,Gerstein :: 1
2001 -Noncoding RNA gene detection using comparative sequence analysis - Rivas,Eddy :: 1
1996 -RNA pseudoknot modeling using intersections of stochastic context free grammars with applications to database search - Brown,Wilson :: 1
2002 -Making sense of microarray data distributions - Hoyle,Rattray,Jupp,Brass :: 1
1999 -The application of principal component analysis to stylometry - Binongo,Smith :: 1
2000 -The large-scale organization of metabolic networks - Jeong :: 1
1998 -The frequency distribution of gene family sizes in complete genomes - Huynen,van Nimwegen :: 1
1996 -Interfering contexts of regulatory sequence elements - Trifonov :: 1
1999 -Genome phylogeny based on gene content - Snel,Bork,Huynen :: 1
2000 -The language of RNA: a formal grammar that includes pseudoknots - Rivas,Eddy :: 1
1998 -SMART, a simple modular architecture research tool: identification of signalling domains - Schultz,Milpetz,Bork,Ponting :: 1
2000 -Small subunit ribosomal RNA modeling using stochastic context-free grammars - Brown :: 1
2001 -Mapping protein family interactions: intramolecular and intermolecular protein family interaction repertoires in the PDB and yeast - Park,Lappe,Teichmann :: 1
2001 -Reading the book of life - Searls :: 1
1997 -Prediction of complete gene structures in human genomic DNA - Burge,Karlin :: 1
1996 -Language and Computers - Barnbrook :: 1
2001 -From Jabberwocky to genome: Lewis Carroll and computational biology - Searls :: 1
2001 -Statistical stylistics and authorship attribution: an empirical investigation - Hoover :: 1
2002 -Recursive domains in proteins - Przytycka,Srinivasan,Rose :: 1
2001 -Mining the bibliome - Searls :: 1
2001 -Protein family and fold occurrence in genomes: power-law behaviour and evolutionary model - Qian,Luscombe,Gerstein :: 1
1995 -The Federalist revisited: new directions in authorship attribution - Holmes,Forsyth :: 1
1998 -Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids - Durbin,Krogh,Mitchison,Eddy :: 1
1999 -RNA secondary structure prediction using stochastic context-free grammars and evolutionary history - Knudsen,Hein :: 1
2001 -On the evolution of protein folds: are similar motifs in different protein folds the result of convergence, insertion, or relics of an ancient peptide world? - Lupas,Ponting,Russell :: 1
1998 -Literature and Artifacts - Tanselle :: 1
2001 -Circularly permuted proteins in the protein structure database - Jung,Lee :: 1
1987 -Formal language theory and DNA: an analysis of the generative capacity of specific recombinant behaviors - Head :: 1
1999 -Assigning protein functions by comparative genome analysis: protein phylogenetic profiles - Pellegrini :: 1
1999 -Detecting protein function and protein-protein interactions from genome sequences - Marcotte :: 1
1999 -Neural network identification of poets using letter sequences - Hoorn,Frank,Kowalczyk,van der :: 1
1992 -The linguistics of DNA - Searls :: 1
1998 -The state of authorship attribution studies: some problems and solutions - Rudman :: 1
1999 -Protein structural topology: automated analysis and diagrammatic representation - Westhead,Slidel,Flores,Thornton :: 1
1984 -Genome structure described by formal languages - Brendel,Busse :: 1
2000 -Genie--gene finding in Drosophila melanogaster - Reese,Kulp,Tammana,Haussler :: 1
2000 -Horizontal gene transfer in bacterial and archaeal complete genomes - Garcia-Vallve,Romeu,Palau :: 1
2000 -Speech and Language Processing - Jurafsky,Martin :: 1
2001 -Estimating distances between manuscripts based on copying errors - Spenser,Howe :: 1
1994 -From sequences to shapes and back: a case study in RNA secondary structures - Schuster,Fontana,Stadler,Hofacker :: 1
2000 -RNA pseudoknot prediction in energy-based models - Lyngso,Pedersen :: 1
1999 -Historical Linguistics: An Introduction - Campbell :: 1

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